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[1]林文韜 王武煉 肖莉莉 張怡元.基于GEO數(shù)據(jù)庫發(fā)現(xiàn)骨肉瘤關鍵基因GMFG及其生物學功能[J].福建醫(yī)藥雜志,2020,42(02):112-115.
 LIN Wentao,WANG Wulian,XIAO Lili,et al.Identification of the key gene GMFG and its biological function in osteosarcoma based on GEO database[J].FUJIAN MEDICAL JOURNAL,2020,42(02):112-115.
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基于GEO數(shù)據(jù)庫發(fā)現(xiàn)骨肉瘤關鍵基因GMFG及其生物學功能()
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《福建醫(yī)藥雜志》[ISSN:1002-2600/CN:35-1071/R]

卷:
42
期數(shù):
2020年02期
頁碼:
112-115
欄目:
基礎研究
出版日期:
2020-04-15

文章信息/Info

Title:
Identification of the key gene GMFG and its biological function in osteosarcoma based on GEO database
文章編號:
1002-2600(2020)02-0112-04
作者:
林文韜 王武煉 肖莉莉 張怡元
廈門大學附屬福州第二醫(yī)院骨科(福州 350007)
Author(s):
LIN Wentao WANG Wulian XIAO Lili ZHANG Yiyuan.
Department of Orthopedics, Fuzhou Second Hospital affiliated to Xiamen University, Fuzhou, Fuian 350007, China
關鍵詞:
骨肉瘤 GMFG 生物信息學
Keywords:
osteosarcoma GMFG bioinformatics
分類號:
R738.1
文獻標志碼:
A
摘要:
目的 基于生物信息學方法篩選骨肉瘤(OS)的關鍵基因及功能預測。方法 檢索GEO 數(shù)據(jù)庫OS數(shù)據(jù)集(GSE14359),使用GEO2R篩選差異基因(DEGs),構建DEGs的蛋白質-蛋白質相互作用網(wǎng)絡(PPI)以及Cytoscape可視化分析確定關鍵基因。并進一步下載關鍵基因共表達基因,基因本體(GO)和(京都基因與基因組百科全書)KEGG分析預測其可能的生物功能。結果 通過對原發(fā)OS組織、OS肺轉移組織和原代成骨細胞之間的差異性和維恩圖分析,獲得385個交集基因。進而使用蛋白質-蛋白質相互作用(PPI)和 Cytoscape 從交集基因中篩選出關鍵基因GMFG。 GMFG共表達基因主要參與中性粒細胞激活、中性粒細相關的免疫反應等過程,并顯著富集于核糖體細胞處理過程、白細胞跨膜轉運過程等通路。結論 GMFG作為OS關鍵基因,在OS進展中發(fā)揮促癌作用,可能是OS的可靠的診療靶點。
Abstract:
Objective To screen the key genes and functional prediction of osteosarcoma(OS)based on bioinformatics.Methods The OS dataset(GSE14359)from GEO database were retrieved, and GEO2R to screen the differential genes(DEGs)were used.We further constructed the protein and protein interaction network(PPI)of DEG, and identified the key gene through the visualized analysis of Cytoscape.The coexpression genes of key gene were downloaded, and the possible biological function was predicted by GO and KEGG analysis.Results By difference analysis and Venn diagram between conventional osteosarcoma tissue, osteosarcoma lung metastasis tissue and non-neoplastic primary osteoblast cells, we obtained 385 intersection genes.Then, PPI and Cytoscape were used to screen the key gene(GMFG).The co-expression genes of GMFG were mainly involved in neutrophil activation, neutrophil activation involved in immune response, and were significantly enriched in ribosome cell processing, leu-kocyte transendothelial migration.Conclusion As a key gene of OS, GMFG plays a role in promoting carcinogenesis in the progression of OS, which may be a reliable diagnosis and treatment target of OS.

參考文獻/References:

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備注/Memo

備注/Memo:
基金項目:2019年福建省衛(wèi)生健康青年科研項目(2019-1-84)
更新日期/Last Update: 2020-04-15